I've had a look at the vector maps in your workspace. There does seem to be an issue whereby RM is not truncating the northern edge of your lower map. This is a bit strange, and we will have to look into it to find out what is going on. It does not appear that there is any issue with the export (what you see in the unit is the same as what I see in RM), and the maps are not displaced. There is just a small region of overlap.
Top image shows both separate maps - note the mouse tracer, which is circled in the left map:
Combining both maps together into a single new map (just copying over the isobath layers), and setting the same fixed depth palette for both:
So in summary - there is something going on with the map boundary truncating, but as far as I can tell it is not affecting the map position in any way. We will look into it and I will update you when we have an answer.