It shouldn't be too hard to do this, but if you have three separate shorelines now then you will probably need to create a new shoreline that covers the entire map area. Once you have a new shoreline, you can just import all of the data for the 3 old maps and build as normal. If you need to export data from your old ReefMaster workspace, then you can multi-select all of the required tracks and export in a format of your choice, CSV probably being the easiest.