Hi Ed,
Maps can be made from any number of individual track-logs; each time you record a new track, just import it and add it to your project and re-generate the map. The new data will be incorporated. We have users making individual maps 15km (10 miles, more or less) across, using over 400 tracks. That is at the upper limit of what ReefMaster can support, and map generating will take a while for maps that large. You'll also need to be running 64 bit Windows with a decent amount of memory to make maps as big as that in one go.
If you need even bigger maps, then you can create multiple map projects. Contours from multiple map projects can be combined into a single user map and exported from there. It is also possible when exporting AT5 maps to just create multiple separate map files. So long as you rename these so that the filenames do not clash (keeping the original extensions), then the unit will load all maps present on the memory card.
Matt