Dan,
There's a good chance that the coordinates are in
UTM. RM doesn't work with those directly, but there are various to do it. We are giving the CSV import an overhaul in the next release that will include a choice of projections, column ordering, +ve/-ve depth etc (and maybe data thinning as well). In the mean time, if you share a link to your file to our contact address I could probably convert your file for you - which area is it for?
Bear in mind that 30 x 5km @ 1m would be in the order of 150m data points. That's way too much for RM to handle in one go, as we are really geared towards high resolution maps of small areas. We can handle about 4M points per map, at a push (still would still be a huge amount to actually collect, with a single-beam sonar). If your data was thinning, to say a 4m grid, then you should be able to map it quite easily as 2/3 sections.
Matt